Visualization of large phylogenies

Paloverde 3D tree visualizer --Mac OS 10.3 program for interactive display of large phylogenies in 3D space

Divergence time and rate estimation

r8s software package -- Now available for Mac OS 10.2+ and Linux

Phylogenomics/Phyloinformatics tools (the "Phylota project")

Tools for assembling data sets from sequence databases, constructing bicliques, visualizing data availability matrices, etc. Go to Phylota project software page.

 

Supertree construction

Visit our supertree construction site for links to information and implementations of new supertree methods, including "flip supertrees".