#NEXUS Begin trees; [Treefile saved Tue Jul 20 18:37:43 2004] [! >Data file = /Users/sanderm/MyDOCUMENTS/SUPERTREE/green254.mrp >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 1899 total characters: > All characters are of type 'unord' > All characters have equal weight > 254 characters are parsimony-uninformative > Number of parsimony-informative characters = 1645 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Initial swapping on 8 trees already in memory > Steepest descent option not in effect > Initial 'MaxTrees' setting = 2500 > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 656608 > Score of best tree(s) found = 2962 > Number of trees retained = 8 > Time used = 2 sec (CPU time = 2.08 sec) ] Translate 1 ti3240_Psilotum_nudum, 2 ti33152_Ephedra_sinica, 3 ti3382_Gnetum_gnemon, 4 ti3329_Picea_abies, 5 ti3350_Pinus_thunbergii, 6 ti88728_Pinus_koraiensis, 7 ti3311_Ginkgo_bilobia, 8 ti42329_Zamia_furfuracea, 9 ti13099_Illicium_parviflorum, 10 ti13351_Austrobaileya_scandens, 11 ti4419_Nymphaea_odorata, 12 ti4426_Cabomba_caroliniana, 13 ti13333_Amborella_trichopoda, 14 ti50507_Schisandra_chinensis, 15 ti3429_Calycanthus_floridus, 16 ti212734_Calycanthus_floridus_var_glaucus, 17 ti28498_Asarum_canadense, 18 ti4151_Antirrhinum_majus, 19 ti85636_Oenothera_elata_subsp_hookeri, 20 ti13569_Hydrastis_canadensis, 21 ti22303_Lactoris_fernandeziana, 22 ti54733_Magnolia_stellata, 23 ti3696_Populus_deltoides, 24 ti3419_Drimys_winteri, 25 ti34305_Lotus_corniculatus_var_japonicus, 26 ti3879_Medicago_sativa, 27 ti4428_Ceratophyllum_demersum, 28 ti3562_Spinacia_oleracea, 29 ti3847_Glycine_max, 30 ti3888_Pisum_sativum, 31 ti3702_Arabidopsis_thaliana, 32 ti3708_Brassica_napus, 33 ti13413_Cercidiphyllum_japonicum, 34 ti130722_Gunnera_chilensis, 35 ti4120_Ipomoea_batatas, 36 ti4097_Nicotiana_tabacum, 37 ti33113_Atropa_belladonna, 38 ti4113_Solanum_tuberosum, 39 ti130721_Ascarina_lucida, 40 ti3415_Liriodendron_tulipifera, 41 ti3621_Rheum_x_cultorum, 42 ti13007_Chloranthus_japonicus, 43 ti4513_Hordeum_vulgare, 44 ti112509_Hordeum_vulgare_subsp_vulgare, 45 ti4565_Triticum_aestivum, 46 ti4577_Zea_mays, 47 ti39947_Oryza_sativa_japonica_cultivar_group, 48 ti4530_Oryza_sativa, 49 ti4692_Lilium_superbum, 50 ti35874_Dioscorea_bulbifera, 51 ti4465_Acorus_calamus, 52 ti3077_Chlorella_vulgaris, 53 ti31312_Nephroselmis_olivacea, 54 ti3055_Chlamydomonas_reinhardtii, 55 ti41882_Mesostigma_viride, 56 ti96477_Chaetosphaeridium_globosum, 57 ti48387_Anthoceros_formosae, 58 ti3197_Marchantia_polymorpha, 59 ti13818_Adiantum_capillus_veneris, 60 ti4081_Lycopersicon_esculentum, 61 ti3544_Mesembryanthemum_crystallinum, 62 ti4407_Trochodendron_araliodes, 63 ti13260_Saururus_cernuus, 64 ti3555_Beta_vulgaris_subsp_vulgaris, 65 ti4550_Secale_cereale, 66 ti4177_Epifagus_virginiana, 67 ti15008_Sagittaria_latifolia, 68 ti85269_Spathiphyllum_wallisii, 69 ti3180_Spirogyra_maxima ; tree PAUP_1 = [&U] (1,((((((2,3),(4,(5,6))),(7,8)),(((((9,14),10),((((((15,16),(22,40)),(24,(39,42))),(((17,21),63),(23,27))),((((((((18,66),((35,((36,37),(38,60))),41)),(((19,28),(31,32)),((25,(26,30)),29))),(61,64)),20),34),33),62)),(((((((43,44),(45,65)),46),(47,48)),67),49),(50,(51,68))))),13),(11,12))),(((((52,54),53),55),(56,69)),(57,58))),59)); tree PAUP_2 = [&U] (1,((((((2,3),(4,(5,6))),(7,8)),(((((9,14),10),((((((15,16),(22,40)),(24,(39,42))),((((17,21),63),23),27)),((((((((18,66),((35,((36,37),(38,60))),41)),(((19,28),(31,32)),((25,(26,30)),29))),(61,64)),20),34),33),62)),(((((((43,44),(45,65)),46),(47,48)),67),49),(50,(51,68))))),13),(11,12))),(((((52,54),53),55),(56,69)),(57,58))),59)); tree PAUP_3 = [&U] (1,(((((((2,3),4),(5,6)),(7,8)),(((((9,14),10),((((((15,16),(22,40)),(24,(39,42))),(((17,21),63),(23,27))),((((((((18,66),((35,((36,37),(38,60))),41)),(((19,28),(31,32)),((25,(26,30)),29))),(61,64)),20),34),33),62)),(((((((43,44),(45,65)),46),(47,48)),67),49),(50,(51,68))))),13),(11,12))),(((((52,54),53),55),(56,69)),(57,58))),59)); tree PAUP_4 = [&U] (1,((((((2,3),(4,(5,6))),(7,8)),(((((9,14),10),((((((15,16),(22,40)),(24,(39,42))),(((17,21),63),(23,27))),((((((((18,66),((35,((36,37),(38,60))),41)),(((19,28),(31,32)),((25,(26,30)),29))),(61,64)),20),34),33),62)),(((((((43,44),(45,65)),46),(47,48)),67),49),(50,(51,68))))),13),(11,12))),((((((52,54),53),55),69),56),(57,58))),59)); tree PAUP_5 = [&U] (1,(((((((2,3),4),(5,6)),(7,8)),(((((9,14),10),((((((15,16),(22,40)),(24,(39,42))),((((17,21),63),23),27)),((((((((18,66),((35,((36,37),(38,60))),41)),(((19,28),(31,32)),((25,(26,30)),29))),(61,64)),20),34),33),62)),(((((((43,44),(45,65)),46),(47,48)),67),49),(50,(51,68))))),13),(11,12))),(((((52,54),53),55),(56,69)),(57,58))),59)); tree PAUP_6 = [&U] (1,((((((2,3),(4,(5,6))),(7,8)),(((((9,14),10),((((((15,16),(22,40)),(24,(39,42))),((((17,21),63),23),27)),((((((((18,66),((35,((36,37),(38,60))),41)),(((19,28),(31,32)),((25,(26,30)),29))),(61,64)),20),34),33),62)),(((((((43,44),(45,65)),46),(47,48)),67),49),(50,(51,68))))),13),(11,12))),((((((52,54),53),55),69),56),(57,58))),59)); tree PAUP_7 = [&U] (1,(((((((2,3),4),(5,6)),(7,8)),(((((9,14),10),((((((15,16),(22,40)),(24,(39,42))),(((17,21),63),(23,27))),((((((((18,66),((35,((36,37),(38,60))),41)),(((19,28),(31,32)),((25,(26,30)),29))),(61,64)),20),34),33),62)),(((((((43,44),(45,65)),46),(47,48)),67),49),(50,(51,68))))),13),(11,12))),((((((52,54),53),55),69),56),(57,58))),59)); tree PAUP_8 = [&U] (1,(((((((2,3),4),(5,6)),(7,8)),(((((9,14),10),((((((15,16),(22,40)),(24,(39,42))),((((17,21),63),23),27)),((((((((18,66),((35,((36,37),(38,60))),41)),(((19,28),(31,32)),((25,(26,30)),29))),(61,64)),20),34),33),62)),(((((((43,44),(45,65)),46),(47,48)),67),49),(50,(51,68))))),13),(11,12))),((((((52,54),53),55),69),56),(57,58))),59)); End;