#NEXUS 

Begin trees;  [Treefile saved Thu Jan 22 15:44:26 2004]
[!
>Data file = /tmp/PBS_5877.myriad.ucdavis.edu/green.supermatrixPP.nex1
>Heuristic search settings:
>  Optimality criterion = parsimony
>    Character-status summary:
>      Of 96698 total characters:
>        All characters are of user-defined type "protpars"
>        All characters have equal weight
>        57949 characters are constant
>        20353 variable characters are parsimony-uninformative
>        Number of parsimony-informative characters = 18396
>    Gaps are treated as "missing"
>    Multistate taxa interpreted as uncertainty
>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)
>  Initial swapping on 1 tree already in memory
>  Steepest descent option not in effect
>  Time limit of 1800 seconds imposed
>  'MaxTrees' setting = 10000 (will not be increased)
>  Branches collapsed (creating polytomies) if maximum branch length is zero
>  'MulTrees' option in effect
>  Topological constraints not enforced
>  Trees are unrooted
>
>Heuristic search terminated by time limit (while swapping on tree #1)
>   Total number of rearrangements tried = 42229
>   Score of best tree(s) found = 86876
>   Number of trees retained = 17
>   Time used = 00:30:59 (CPU time = 00:30:59.0)
]
tree PAUP_1 = [&U] (ti3240_Psilotum_nud,((((((ti33152_Ephedra_sin,ti3382_Gnetum_gne),((ti3350_Pinus_thu,ti88728_Pinus_kor),ti3329_Picea_abi)),(ti42329_Zamia_fur,ti3311_Ginkgo_bil)),((((((((((((((((ti4151_Antirrhinum_maj,ti4177_Epifagus_vir),(((ti4081_Lycopersicon_esc,ti4113_Solanum_tub),(ti4097_Nicotiana_tab,ti33113_Atropa_bel)),ti4120_Ipomoea_bat)),((ti85636_Oenothera_ela,((((ti3879_Medicago_sat,ti3888_Pisum_sat),ti34305_Lotus_cor),ti3847_Glycine_max),(ti3702_Arabidopsis_tha,ti3708_Brassica_nap))),((ti3544_Mesembryanthemum_cry,(ti3621_Rheum_x,ti3562_Spinacia_ole)),ti3555_Beta_vul))),ti130722_Gunnera_chi),ti4407_Trochodendron_ara),ti13413_Cercidiphyllum_jap),(ti13569_Hydrastis_can,ti3696_Populus_del)),((ti22303_Lactoris_fer,ti28498_Asarum_can),ti13260_Saururus_cer)),(((ti3429_Calycanthus_flo,ti212734_Calycanthus_flo),((ti130721_Ascarina_luc,ti13007_Chloranthus_jap),(ti54733_Magnolia_ste,ti3415_Liriodendron_tul))),ti3419_Drimys_win)),ti4428_Ceratophyllum_dem),((ti35874_Dioscorea_bul,(((((ti4513_Hordeum_vul,ti112509_Hordeum_vul),(ti4550_Secale_cer,ti4565_Triticum_aes)),ti4577_Zea_may),(ti39947_Oryza_sat,ti4530_Oryza_sat)),ti4692_Lilium_sup)),ti4465_Acorus_cal)),ti85269_Spathiphyllum_wal),((ti13099_Illicium_par,ti50507_Schisandra_chi),ti13351_Austrobaileya_sca)),ti13333_Amborella_tri),(ti4419_Nymphaea_odo,ti4426_Cabomba_car)),ti15008_Sagittaria_lat)),((((ti3180_Spirogyra_max,(((ti3077_Chlorella_vul,ti3055_Chlamydomonas_rei),ti31312_Nephroselmis_oli),ti41882_Mesostigma_vir)),ti96477_Chaetosphaeridium_glo),ti3197_Marchantia_pol),ti48387_Anthoceros_for)),ti13818_Adiantum_cap));
end;